This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000QJJY.1

France/LOC_000QJJY.1/2024
M. Gasparine & A. Falchi

University of Corsica, Unite des Virus Emergents

Sample details

Collection date
2024
Earliest release date
2025-08-10
Sampling location
France
Isolate name
1008

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-18 16:23insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-08-10
INSDC accession S

Host

Host

Submission details

Submission ID
PV976893.1.S
Submitting group
Date submitted
2026-06-18 16:23:49 UTC
Date released
2026-06-18 16:27:49 UTC

reference_S
[{"label":"Variant S","name":"variant_S","customDisplay":{"type":"variantReference","displayGroup":"reference_S","label":"Closest reference S"},"value":true,"header":"Clade & Lineage","type":{"kind":"metadata","metadataType":"boolean"}}]

Clade & Lineage

Closest reference S
N/A (variant)

Files

Annotations

Alignment and QC

Length S
1629 (90.2%)
Total SNPs S
98

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • C31G
  • G34A
  • A38G
  • A84G
  • A98T
  • C150T
  • A193G
  • A213G
  • C225T
  • C228T
  • G246A
  • G330A
  • A333G
  • T372C
  • T384C
  • T387C
  • A393G
  • A441G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:Y20F
  • NP:S52G
  • NP:V246I
Deletions
N/A
Insertions
N/A