This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000QJE7.1

France/LOC_000QJE7.1/2024
M. Gasparine & A. Falchi

University of Corsica, Unite des Virus Emergents

Sample details

Collection date
2024
Earliest release date
2025-08-10
Sampling location
France
Isolate name
761

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-18 16:23insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-08-10
INSDC accession S

Host

Host

Submission details

Submission ID
PV976888.1.S
Submitting group
Date submitted
2026-06-18 16:23:49 UTC
Date released
2026-06-18 16:27:49 UTC

reference_S
[{"label":"Variant S","name":"variant_S","customDisplay":{"type":"variantReference","displayGroup":"reference_S","label":"Closest reference S"},"value":true,"header":"Clade & Lineage","type":{"kind":"metadata","metadataType":"boolean"}}]

Clade & Lineage

Closest reference S
N/A (variant)

Files

Annotations

Alignment and QC

Length S
308 (17.1%)
Total SNPs S
29

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • A64G
  • A67G
  • G70A
  • A83G
  • A84G
  • A98T
  • A108G
  • G113A
  • C150T
  • C161A
  • A162C
  • G169C
  • C171G
  • A173G
  • A193G
  • A213G
  • C225T
  • C228T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:N9D
  • NP:K10E
  • NP:D11N
  • NP:K15R
  • NP:Y20F
  • NP:G25E
  • NP:P41H
  • NP:D44Q
  • NP:K45R
  • NP:S52G
  • NP:T71K
  • NP:E79Q
  • NP:V89A
  • NP:K91R
  • NP:L93P
Deletions
N/A
Insertions
N/A