This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000QJCB.1

France/LOC_000QJCB.1/2024
M. Gasparine & A. Falchi

University of Corsica, Unite des Virus Emergents

Sample details

Collection date
2024
Earliest release date
2025-08-10
Sampling location
France
Isolate name
3424

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-18 16:23insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-08-10
INSDC accession S

Host

Host

Submission details

Submission ID
PV976885.1.S
Submitting group
Date submitted
2026-06-18 16:23:49 UTC
Date released
2026-06-18 16:27:49 UTC

reference_S
[{"label":"Variant S","name":"variant_S","customDisplay":{"type":"variantReference","displayGroup":"reference_S","label":"Closest reference S"},"value":true,"header":"Clade & Lineage","type":{"kind":"metadata","metadataType":"boolean"}}]

Clade & Lineage

Closest reference S
N/A (variant)

Files

Annotations

Alignment and QC

Length S
1547 (71.8%)
Total SNPs S
134
Total inserted nucs S
1
Total unknown nucs S
250
Total frame shifts S
1
Frame shifts S
NP:419-483(nt:1294-1488)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • T116C
  • A134T
  • T139C
  • C150T
  • G174A
  • A193G
  • G205C
  • G208C
  • A213G
  • G217C
  • A223G
  • C225T
  • C228T
  • G246A
  • T273C
  • A311G
  • G319C
  • C327T
Deletions
N/A
Insertions

S segment

ins_1293:G

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:L26P
  • NP:N32I
  • NP:Y34H
  • NP:S52G
  • NP:D56H
  • NP:A57P
  • NP:D60H
  • NP:I62V
  • NP:K91R
  • NP:E94Q
  • NP:G101A
  • NP:E112Q
  • NP:E121Q
  • NP:D136H
  • NP:E161Q
  • NP:V166I
  • NP:R195H
  • NP:F204I
Deletions
N/A
Insertions
N/A