This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000QJ7M.1

France/LOC_000QJ7M.1/2024
M. Gasparine & A. Falchi

University of Corsica, Unite des Virus Emergents

Sample details

Collection date
2024
Earliest release date
2025-08-10
Sampling location
France
Isolate name
ECH

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-18 16:23insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-08-10
INSDC accession L

Host

Host

Submission details

Submission ID
PV976880.1.L
Submitting group
Date submitted
2026-06-18 16:23:49 UTC
Date released
2026-06-18 16:27:49 UTC

reference_L
[{"label":"Variant L","name":"variant_L","customDisplay":{"type":"variantReference","displayGroup":"reference_L","label":"Closest reference L"},"value":true,"header":"Clade & Lineage","type":{"kind":"metadata","metadataType":"boolean"}}]

Clade & Lineage

Closest reference L
N/A

Files

Annotations

Alignment and QC

Length L
11837 (90.2%)
Total SNPs L
837
Total deleted nucs L
1
Total unknown nucs L
914
Total frame shifts L
1
Frame shifts L
RdRp:1028-3946(nt:3157-11914)

Nucleotide mutations

Mutations called relative to the NC_005301.3 reference

Substitutions

L segment

  • G93A
  • T106C
  • C117T
  • G119C
  • A123G
  • A126G
  • G130C
  • T151C
  • C153G
  • T254A
  • C256T
  • A257C
  • G272A
  • T292C
  • A298G
  • C313T
  • A314G
  • G323A
Deletions

L segment

3156
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 reference

Substitutions

RdRp

  • RdRp:S6N
  • RdRp:A14V
  • RdRp:G15R
  • RdRp:Q16R
  • RdRp:Y17C
  • RdRp:S26C
  • RdRp:Y60N
  • RdRp:I61L
  • RdRp:E66K
  • RdRp:R80G
  • RdRp:G83S
  • RdRp:L103I
  • RdRp:S106F
  • RdRp:T115A
  • RdRp:I116V
  • RdRp:I118Y
  • RdRp:E128G
  • RdRp:F133L
Deletions
N/A
Insertions
N/A