This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000QJ5R.1

France/LOC_000QJ5R.1/2024
M. Gasparine & A. Falchi

University of Corsica, Unite des Virus Emergents

Sample details

Collection date
2024
Earliest release date
2025-08-10
Sampling location
France
Isolate name
2456

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-18 16:23insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-08-10
INSDC accession M
INSDC accession S

Host

Host

Submission details

Submission ID
PV976877.1.M/PV976894.1.S
Submitting group
Date submitted
2026-06-18 16:23:49 UTC
Date released
2026-06-18 16:27:49 UTC

reference_M
[{"label":"Variant M","name":"variant_M","customDisplay":{"type":"variantReference","displayGroup":"reference_M","label":"Closest reference M"},"value":true,"header":"Clade & Lineage","type":{"kind":"metadata","metadataType":"boolean"}}]
reference_S
[{"label":"Variant S","name":"variant_S","customDisplay":{"type":"variantReference","displayGroup":"reference_S","label":"Closest reference S"},"value":true,"header":"Clade & Lineage","type":{"kind":"metadata","metadataType":"boolean"}}]

Clade & Lineage

Closest reference M
N/A
Closest reference S
N/A (variant)

Files

Annotations

Alignment and QC

Length M
5366 (98.3%)
Length S
1673 (91.7%)
Total SNPs M
714
Total SNPs S
42
Total inserted nucs M
4
Total inserted nucs S
16

Nucleotide mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

M segment

  • G65A
  • T81C
  • C82T
  • G103A
  • G113A
  • T115C
  • T116C
  • C118T
  • G120A
  • T122C
  • G124A
  • A127G
  • A139G
  • G142A
  • A143G
  • A149C
  • C151T
  • C155T

S segment

  • G4T
  • T16A
  • A98T
  • A162G
  • T165C
  • T204C
  • T258C
  • A311G
  • G330A
  • G339A
  • A396G
  • C471T
  • A474G
  • G477A
  • C636T
  • G765A
  • G822A
  • G852A
Deletions
N/A
Insertions

M segment

ins_0:TCTC

S segment

ins_0:TCTCAAAGAAACACGT

Amino acid substitutions

Substitutions called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

GPC

  • GPC:V9I
  • GPC:F10L
  • GPC:C11Y
  • GPC:K19E
  • GPC:N21H
  • GPC:P23S
  • GPC:G26E
  • GPC:E28I
  • GPC:N31K
  • GPC:H33D
  • GPC:V34T
  • GPC:D39S
  • GPC:S41N
  • GPC:Q42L
  • GPC:P44S
  • GPC:P46Q
  • GPC:P53S
  • GPC:V54I

NP

  • NP:Y20F
  • NP:K91R
Deletions
N/A
Insertions
N/A