This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000QHJZ.1

Kazakhstan/LOC_000QHJZ.1/2024
B. M. A. Maxat, M. G. K. Gulzhan, M. K. T. Kydyrbay, S. S. K. Serik, K. B. A. Balzhan & N. B. R. Botagoz

Kazakh Scientific Research Veterinary Institute

Sample details

Collection date
2024
Earliest release date
2025-05-21
Sampling location
Kazakhstan (Turkestan, Arys)
Isolate name
KAZ/154/2025

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-18 16:23insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-05-21
INSDC accession L
INSDC accession S

Host

Host

Submission details

Submission ID
PV646618.1.L/PV646617.1.S
Submitting group
Date submitted
2026-06-18 16:23:49 UTC
Date released
2026-06-18 16:27:49 UTC

reference_L
[{"label":"Variant L","name":"variant_L","customDisplay":{"type":"variantReference","displayGroup":"reference_L","label":"Closest reference L"},"value":true,"header":"Clade & Lineage","type":{"kind":"metadata","metadataType":"boolean"}}]
reference_S
[{"label":"Variant S","name":"variant_S","customDisplay":{"type":"variantReference","displayGroup":"reference_S","label":"Closest reference S"},"value":true,"header":"Clade & Lineage","type":{"kind":"metadata","metadataType":"boolean"}}]

Clade & Lineage

Closest reference L
N/A
Closest reference S
N/A (variant)

Files

Annotations

Alignment and QC

Length L
528 (4.36%)
Length S
484 (26.8%)
Total SNPs L
88
Total SNPs S
71

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

L segment

  • A526G
  • C529T
  • T535C
  • G538T
  • C541T
  • T550G
  • G553A
  • A563G
  • A565T
  • A571G
  • G578A
  • G583A
  • C586T
  • G589A
  • A590G
  • C595T
  • G597A
  • T601C

S segment

  • T141C
  • C150T
  • G155A
  • A164G
  • T166C
  • A173G
  • G174A
  • G180A
  • C183T
  • A186G
  • C201T
  • G231A
  • T234A
  • G240A
  • A252C
  • T261C
  • T267C
  • T273C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:S39N
  • NP:N42S
  • NP:K45R
  • NP:D116E
  • NP:N150H
  • NP:Q179L

RdRp

  • RdRp:T163A
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:T215A
  • RdRp:K275R
  • RdRp:I279V
Deletions
N/A
Insertions
N/A