This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
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LOC_000QH02.1
Download
Download FASTA
Download metadata TSV
Tajikistan/LOC_000QH02.1/2023-06-12
J. D'Addiego,
M. Mullojanova,
T. Hikmatov,
F. Tishkova &
R. Hewson
UK Health Security Agency, Research & Evaluation
Sample details
Collection date
2023-06-12
Earliest release date
2025-04-05
Sampling location
Tajikistan
Isolate name
CCHFV_C6
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-18 16:23
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2025-04-05
INSDC accession L
PV390621.1
INSDC accession M
PV390614.1
INSDC accession S
PV390603.1
Host
Host
human
Submission details
Submission ID
PV390621.1.L/PV390614.1.M/PV390603.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-18 16:23:49 UTC
Date released
2026-06-18 16:27:49 UTC
reference_L
[{"label":"Variant L","name":"variant_L","customDisplay":{"type":"variantReference","displayGroup":"reference_L","label":"Closest reference L"},"value":true,"header":"Clade & Lineage","type":{"kind":"metadata","metadataType":"boolean"}}]
reference_M
[{"label":"Variant M","name":"variant_M","customDisplay":{"type":"variantReference","displayGroup":"reference_M","label":"Closest reference M"},"value":true,"header":"Clade & Lineage","type":{"kind":"metadata","metadataType":"boolean"}}]
reference_S
[{"label":"Variant S","name":"variant_S","customDisplay":{"type":"variantReference","displayGroup":"reference_S","label":"Closest reference S"},"value":true,"header":"Clade & Lineage","type":{"kind":"metadata","metadataType":"boolean"}}]
Clade & Lineage
Closest reference L
N/A
Closest reference M
N/A
Closest reference S
N/A (variant)
Files
Annotations
LOC_000QH02.1.embl
Alignment and QC
Length L
12131 (99.3%)
Length M
5203 (95.1%)
Length S
1673 (91.5%)
Total SNPs L
1581
Total SNPs M
999
Total SNPs S
232
Total inserted nucs L
49
Total inserted nucs M
1
Total inserted nucs S
16
Total deleted nucs L
3
Total ambiguous nucs L
56
Total ambiguous nucs M
13
Total ambiguous nucs S
5
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
A
35
G
G
43
C
C
48
T
T
49
C
C
59
T
C
64
T
T
65
G
G
71
T
A
72
T
C
85
T
G
93
A
A
109
G
G
112
A
T
121
C
T
131
A
C
136
T
C
145
T
T
151
C
Show more
M segment
G
46
T
A
47
G
G
52
A
A
53
C
G
65
A
A
66
G
T
67
A
A
76
G
T
78
C
T
79
C
G
80
T
C
88
T
C
92
T
T
94
C
T
96
C
T
98
C
T
101
C
G
103
A
Show more
S segment
T
16
A
C
31
G
T
32
C
G
34
A
A
45
G
C
48
T
T
63
C
A
65
G
G
75
A
A
84
G
A
98
T
A
102
G
A
108
G
T
111
C
C
126
T
C
135
T
T
141
C
C
150
T
Show more
Deletions
L segment
11996, 12086, 12087
Insertions
L segment
ins_66:CC, ins_11927:GT, ins_12051:TAGTGCAATTCTTTCAAC, ins_12108:TTGATTATTTCTAGGGTGTGGGGAGAA
M segment
ins_5162:A
S segment
ins_0:TCTCAAAGAAACACGT
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
H
2
Y
GPC:
I
3
T
GPC:
S
4
P
GPC:
M
6
L
GPC:
Y
7
C
GPC:
F
10
L
GPC:
Q
13
K
GPC:
C
15
W
GPC:
L
17
S
GPC:
G
18
E
GPC:
K
19
G
GPC:
T
20
A
GPC:
N
21
H
GPC:
P
23
L
GPC:
H
24
S
GPC:
G
26
E
GPC:
E
28
Q
GPC:
N
30
S
Show more
NP
NP:
N
9
S
NP:
Y
20
F
NP:
K
45
R
NP:
D
116
E
NP:
N
150
H
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
S
275
N
NP:
I
277
V
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
L
90
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
V
214
F
RdRp:
A
263
T
RdRp:
K
275
R
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
M segment
S segment