This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000QBAN.1

Pakistan/LOC_000QBAN.1/2023-08-26
M. Umair, S. A. Haider, Z. Jamal, M. Ammar, R. Hakim, Q. Ali & M. Salman

National Institute of Health, Department of Virology

Sample details

Collection date
2023-08-26
Earliest release date
2023-12-26
Sampling location
Pakistan
Isolate name
CCHF/NIHPAK-19/2023

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-18 16:23insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-12-26
INSDC accession L
INSDC accession M
INSDC accession S

Host

Host

Submission details

Submission ID
OR964926.1.L/OR964937.1.M/OR964915.1.S
Submitting group
Date submitted
2026-06-18 16:23:49 UTC
Date released
2026-06-18 16:27:49 UTC

reference_L
[{"label":"Variant L","name":"variant_L","customDisplay":{"type":"variantReference","displayGroup":"reference_L","label":"Closest reference L"},"value":true,"header":"Clade & Lineage","type":{"kind":"metadata","metadataType":"boolean"}}]
reference_M
[{"label":"Variant M","name":"variant_M","customDisplay":{"type":"variantReference","displayGroup":"reference_M","label":"Closest reference M"},"value":true,"header":"Clade & Lineage","type":{"kind":"metadata","metadataType":"boolean"}}]
reference_S
[{"label":"Variant S","name":"variant_S","customDisplay":{"type":"variantReference","displayGroup":"reference_S","label":"Closest reference S"},"value":true,"header":"Clade & Lineage","type":{"kind":"metadata","metadataType":"boolean"}}]

Clade & Lineage

Closest reference L
N/A
Closest reference M
N/A
Closest reference S
N/A (variant)

Files

Annotations

Alignment and QC

Length L
12094 (96.9%)
Length M
5258 (95.2%)
Length S
1591 (86.2%)
Total SNPs L
1442
Total SNPs M
153
Total SNPs S
195
Total inserted nucs L
23
Total inserted nucs M
1
Total deleted nucs L
3
Total unknown nucs L
342
Total unknown nucs M
64
Total unknown nucs S
34

Nucleotide mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

L segment

  • G32A
  • A35G
  • T49C
  • T61C
  • C63G
  • C64T
  • T65C
  • T66C
  • G69A
  • G71T
  • G88A
  • G93A
  • A109G
  • G119A
  • A124G
  • T131A
  • C136T
  • T139C

M segment

  • G65A
  • A127G
  • G145A
  • C156T
  • T181G
  • T242C
  • A244G
  • A265C
  • T278A
  • T317C
  • A360G
  • C364T
  • C375T
  • C388T
  • G392A
  • G394A
  • A404G
  • A416G

S segment

  • C31G
  • T63C
  • A93G
  • A98T
  • A102G
  • C126T
  • C150T
  • G153A
  • T156C
  • T166C
  • A173G
  • A186G
  • C201T
  • G231A
  • A252C
  • T273C
  • G282T
  • T287C
Deletions

L segment

12028-12030
Insertions

L segment

ins_58:T, ins_11925:GT, ins_12081:TTTAATATCCAACTACTCCA

M segment

ins_5215:N

Amino acid substitutions

Substitutions called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

GPC

  • GPC:P23L
  • GPC:N31K
  • GPC:S64T
  • GPC:Y77H
  • GPC:E91G
  • GPC:P96L
  • GPC:V102I
  • GPC:S106G
  • GPC:T110A
  • GPC:G118R
  • GPC:T122K
  • GPC:T124S
  • GPC:S131N
  • GPC:S139P
  • GPC:Y144H
  • GPC:G167S
  • GPC:N170S
  • GPC:L171S

NP

  • NP:Y20F
  • NP:V83A
  • NP:D116E
  • NP:A124S
  • NP:Q179L
  • NP:D199E
  • NP:V254I
  • NP:R270K
  • NP:A307V
  • NP:Q405L
  • NP:R428K

RdRp

  • RdRp:S6N
  • RdRp:G15S
  • RdRp:S19T
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:T163A
  • RdRp:M172V
  • RdRp:S205P
  • RdRp:K275R
  • RdRp:I279V
  • RdRp:S498G
  • RdRp:I505T
  • RdRp:A508V
  • RdRp:K522R
  • RdRp:T720S
Deletions
N/A
Insertions
N/A